The Oncologist, Vol. 12, No. 6, 622-630, June 2007; doi:10.1634/theoncologist.12-6-622 © 2007 AlphaMed Press
An Association Between RRM1 Haplotype and Gemcitabine-Induced Neutropenia in Breast Cancer PatientsaCancer Metastasis Research Center, bYonsei Cancer Center, cBrain Korea 21 Project for Medical Sciences, dDepartment of Internal Medicine, eDepartment of Pathology, Yonsei University College of Medicine, Seoul, Korea Correspondence: Hyun Cheol Chung, M.D., Ph.D., Cancer Metastasis Research Center, Yonsei Cancer Center, Yonsei University College of Medicine, Seodaemun-gyu, Shinchon-dong 134, Seoul, Korea, 120-752. Telephone: 82-2-2228-8132; Fax: 82-2-393-3652; e-mail: unchung8{at}yumc.yonsei.ac.kr Received December 7, 2006; accepted for publication March 9, 2007.
Purpose. We examined the pattern of single-nucleotide polymorphisms (SNPs) of gemcitabine metabolism-related and target genes in breast cancer patients and evaluated their association with drug response or toxicity. Patients and Methods. SNPs in deoxycytidine kinase (dCK), deoxycytidine monophosphate deaminase (DCTD), and ribonucleotide reductase M1 polypeptide (RRM1) were analyzed with genomic DNA of 10 breast cancer cell lines, 74 peripheral blood mononuclear cell (PBMC) samples from advanced breast cancer patients treated with gemcitabine, and 56 PBMC samples from healthy volunteers. Results. The incidences of SNPs of breast cancer patients were 1.4% in dCK (626 A>G), 10.8% in DCTD (315 T>C), 40.5% in the first RRM1 (1082 C>A), 44.6% in the second RRM1 (2455 A>G), 44.6% in the third RRM1 (2464 G>A), and 23% in two RRM1 sites (2455 A>G and 2464 G>A) that were similar to those of the normal control group. We found a double SNP of RRM1 (2455 A>G and 2464 G>A) to be the novel haplotype that was associated with a lower frequency of chemotherapy-induced toxicity, such as neutropenia (p < .01) and G-CSF requirement (p < .005). Conclusion. RRM1 haplotype showed an association with susceptibility to gemcitabine monotherapy in breast cancer patients. Disclosure of potential conflicts of interest is found at the end of this article.
Gemcitabine (2'2-difluorodeoxycytidine [dFdC]) is a specific analogue of the native pyrimidine nucleotide deoxycytidine. It is a novel anticancer agent that has significant activity in carcinomas of the ovary, lung, pancreas, and breast [1]. Gemcitabine has a complex metabolic pathway for cytotoxicity [2, 3]. It is transported into the cell by nucleoside transporters, phosphorylated by deoxycytidine kinase (dCK) to its active monophosphate form [4], further phosphorylated to the triphosphate form, and then incorporated into the DNA. Therefore, dCK plays a key role in the activation of gemcitabine and its activity correlates with drug sensitivity [59]. Gemcitabine is inactivated by deoxycytidine monophosphate deaminase (DCTD) into its inactive form of difluorodeoxyuridine (dFdU). Ribonucleotide reductase (RR) is the rate-limiting step in DNA synthesis. It is the only known enzyme that converts ribonucleotides to deoxyribonucleoside for DNA polymerization and repair [10]. RR is a holoenzyme consisting of dimerized RR subunit 1 and 2 (RRM1, RRM2). RRM1 has been shown to function with the p53-regulated RRM2 homologue p53R2, which is important in DNA repair secondary to genotoxic stress [11]. In in vitro studies, increased RRM1 expression and activity has been shown to be a marker for gemcitabine resistance [1214]. In gemcitabine metabolism, where 13 genes are involved, the first step in phosphorylation is catalyzed by dCK, which is the rate-limiting step for further phosphorylation to active metabolites, and thus is essential for the activation of gemcitabine. Alternatively, gemcitabine is inactivated by DCTD into its inactive form. RRM1 is the rate-limiting step of DNA synthesis and is inhibited by diphosphorylated gemcitabine (dFdCDP). dCK deficiency, increased DCTD, and increased RR activity are the main mechanisms of gemcitabine resistance. Therefore, we chose these three rate-limiting steps in our study focusing on the gemcitabine metabolic pathway (DCTD, dCK) or target molecule of gemcitabine (RRM1) as an association marker of clinical outcome (response, toxicity) of gemcitabine monotherapy. For single-nucleotide polymorphism (SNP) site selection, we tried to select nonsynonymous SNPs in the functional and conserved region of the genes among known SNPs when we designed this study. Therefore, we tried to choose SNPs in the conserved coding region without any known function of the SNP. With these criteria, we chose two cSNP sites from DCTD (site 255 and 351) and two cSNP sites from dCK (site 626 and 753) with no known function. Among nine SNP sites in RRM1, we finally chose three nonsynonymous cSNP sites (1082, 2455, 2464) located in the LD block and located in the protein domain and conserved region of RRM1. With the development of a rapid and practical method of genetic polymorphism analysis, we detected polymorphisms of dCK, DCTD, and RRM1 in advanced breast cancer patients who received gemcitabine monotherapy. And we performed an association study to test the relationship between clinical phenotypes and those genetic polymorphisms.
Patients and Healthy Volunteers Seventy-four patients treated at Yonsei Cancer Center for advanced breast cancer were enrolled in the study. Patients eligible for this study had histologically confirmed breast cancer with documented progression after prior use of anthracyclines and taxanes. All patients were required to have a measurable lesion, to be 75 years of age or younger, to have an Eastern Cooperative Oncology Group (ECOG) performance status score of 2, to have an expected survival time of >12 weeks, and to have adequate bone marrow and renal and hepatic functions (hemoglobin >10.0 g/dl, leukocytes >3,000/mm3, platelets >100,000/mm3, total bilirubin and serum creatinine <1.5x the upper normal limit and aspartate aminotransferase and alanine aminotransferase <2x the upper normal limit). Prior therapy had to have been completed at least 4 weeks before study entry with full resolution of toxicities. Informed consent was obtained according to the institutional regulations. The study protocol was approved by the institutional review board. As a control, 56 healthy unrelated female blood donors were included in the study. Patient characteristics are summarized in Table 1.
Treatment Plan Chemotherapy consisted of a single dose of gemcitabine, 850 mg/m2, on days 1, 8, and 15 every 28 days. There was no modification of gemcitabine dose during the whole treatment. If the patient had grade III leukopenia, the patient received G-CSF support (150 µg/m2) and the treatment was delayed until recovery on a weekly base. No prophylactic G-CSF was administered.
Assessment of Response and Toxicity
Cell Lines and Cell Culture
Drug Sensitivity Test by 3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetra Zoliumbromide (MTT) Assay
Genomic DNA Extraction from Cell Lines and Lymphocytes Peripheral blood lymphocytes were collected in heparinized vacutainer tubes (Becton Dickinson, Franklin Lakes, NJ). Lymphocytes were isolated using Ficoll-Paque (Pharmacia, Uppsala, Sweden) following the manufacturer's instructions. Genomic DNA from lymphocytes was isolated with the LaboPassTM Blood kit (Genotein Biotech, Seoul, Korea). Extracted DNA was stored at 70°C.
SNP Target Determinations
Polymerase Chain Reaction
DNA Sequencing
Real-Time PCR Assay
Western Blotting
Statistical Analysis
Patient Characteristics Baseline characteristics for the 74 patients are shown in Table 1. Among 71 evaluable patients, one complete response (1.4%), 13 partial responses (18.3%), and 26 cases of stable disease (36.6%) were documented. The overall response rate was 19.7% and the disease control rate was 56.3%. The most common toxicity was neutropenia, and 32.4% of patients reported grade IIIIV neutropenia. Only 5.5% of the patients showed grade IIIIV thrombocytopenia. Nonhematologic toxicity was mild and only grade II diarrhea was reported in 12.2% of the patients (Table 2).
Frequencies of SNPs In breast cancer patients, the incidences of SNPs were 1.4% in dCK (626 A>G), 10.8% in DCTD (315 T>C), 12.1% in the first RRM1 (1082 C>A), 40.5% in the second RRM1 (2455 A>G), 44.6% in the third RRM1 (2464 G>A), and 23.0% in the two RRM1 SNP sites (2455 A>G and 2464 G>A) (Fig. 1 and Table 3). In healthy volunteers, SNPs were not found in dCK, and the incidences of SNPs were 7.1% in DCTD, 50.0% in the second RRM1, 64.3% in the third RRM1, and 53.6% in the two RRM1 sites (2455 A>G and 2464 G>A). When allele distributions of the three genes were evaluated by the HardyWeinberg equation, there were no differences in SNP frequencies between healthy volunteers and breast cancer patients.
Association Between RRM1 SNP and Clinical Phenotype The associations between RRM1 SNP and treatment response and toxicity were analyzed in breast cancer patients. There were no differences in toxicity between patients having any type of single SNP and patients having a wild-type allele. However, in patients with double SNPs (2455 A>G and 2464 G>A) in RRM1, less toxicity, such as less neutropenia (p < .01), less leukopenia (p < .004), a shorter treatment delay (p < .002), and a lower G-CSF requirement (p < .004) were observed when compared with wild-type or single SNP patients (Fig. 2AE). However, we could not observe any significant association between SNP and tumor response after gemcitabine monotherapy (data not shown).
Association Between RRM1 Haplotype and Gemcitabine Toxicity With three RRM1 SNPs, we constructed six haplotypes (Table 4). A strong association was found between the lower frequency of neutropenia and a haplotype containing two SNPs (2455 A>G and 2464 G>A). No association was observed between clinical response and RRM1 haplotype (wild type, 26%; one SNP, 15%; double SNP, 18% response rate) (Table 5). There was a tendency toward a poor progression-free survival time in patients having the two SNPs (2455 A>G and 2464 G>A) when compared with wild-type or single SNP patients. In addition, poor overall survival was found in patients having the two SNPs when compared with wild-type or single SNP patients (Fig. 3). The median times to progression of the patients with wild type or single SNP and those with two SNPs were 17 and 12 weeks, respectively. The median overall survival times of the patients with wild type or single SNP and those with two SNPs were 60 and 43 weeks, respectively.
In Vitro Association Between RRM1 SNP and Chemosensitivity We selected ten breast cancer cell lines to perform an association study between type of RRM1 SNP and in vitro cytotoxicity to gemcitabine. In breast cancer cell lines, as in patients, RRM1 SNPs appeared more frequently than dCK and DCTD SNPs. The incidences of SNPs were 50.0% in the first RRM1 (1082 C>A), 70.0% in the second RRM1 (2455 A>G), 70.0% in the third RRM1 (2464 G>A), and 60.0% in the two RRM1 SNP sites (2455 A>G and 2464 G>A). There were no differences in gemcitabine sensitivity between cell lines with single SNP and wild-type genotypes (data not shown). Also, we observed that six cell lines with two RRM1 SNPs (2455A>G and 2464 G>A) showed a similar sensitivity to gemcitabine when compared with the cell lines with wild type or one SNP (Fig. 4A). Cell lines with RRM1 SNPs showed similar RNA and protein expression to those of wild-type cell lines (Fig. 4B).
Pharmacogenetics aims to identify genetic polymorphisms that govern an individual's response to specific drugs [15]. Clinical observation of an inherited difference in drug effect was first documented in the 1950s giving rise to the field of pharmacogenetics later. One of the common variations in the human genome is SNP. More than 1.4 million SNPs were identified in the initial sequencing of the human genome, with over 60,000 of these in the coding region of genes. Some of these SNPs have been shown to be associated with substantial changes in metabolism or in the effect of anticancer agents, and some SNPs are now being applied to predict clinical outcome [1618]. In patients with double SNPs (2455 A>G and 2464 G>A) in RRM1, less toxicity was observed, suggesting an association with treatment susceptibility. In contrast, we could not observe any significant association between SNP and tumor response. To date, few studies have addressed the issue of the impact of SNP on chemotherapy efficacy. The 5' tandem repeat polymorphism on the thymidylate synthase gene has been identified as a predictor of clinical outcome for 5-fluorouracilbased chemotherapy in colorectal cancer and acute lymphoblastic leukemia [19]. Because a double SNP was found to be associated with gemcitabine toxicity, we aimed to assess the potential role of specific haplotypes in influencing gemcitabine susceptibility. A strong association was observed between neutropenia and the RRM1 haplotype containing two SNPs (2455 A>G and 2464 G>A). No association was observed between clinical response and RRM1 haplotype, but there was a tendency toward poor progressive-free survival in patients having the haplotype with double SNPs when compared with wild-type or single SNP patients. We suggest that patients with the RRM1 haplotype 2455 A>G and 2464 G>A are genetically more resistant to gemcitabine (relatively poor progression-free survival) and less susceptible to gemcitabine (less general toxicity) than wild-type or single SNP RRM1 patients. It is difficult to draw a definite conclusion from an association study between the SNPs of genomic DNA and clinical phenotypes. Our hypothesis was that patients with sequence variations might show different responses or toxicities from those of patients with wild-type alleles. A silent mutation that does not change the amino acid sequence can alter protein function. In contrast, a wobble protein, as in our cases, can show differences in clinical phenotypes. The selected SNP sites in our study are located at the end of mRNA and they might be implicated in nucleotide transport or metabolism. Alternatively, the anticodon or other molecules may be indirectly influenced during transcription or translation. Similarly, the molecular mechanisms of transcription enhancement by tandem repeats in the excision-repair cross-complementing 1 gene remain largely unknown [19]. RR is usually overexpressed in cancer cells, and therefore RR inhibitors might be useful as anticancer drugs, like gemcitabine [20]. It has been reported that the increase in mRNA level of RRM1 results in drug resistance [12]. With nonsynonymous SNP sites in RRM1 gene, we found similar chemosensitivity, mRNA, and protein level as with the wild type. In contrast, breast cancer patients having double SNPs (2455 A>G and 2464 G>A) showed resistance to gemcitabine. Possible explanations for this gap between the in vitro and in vivo results are: first, double SNPs can cause a different phenotype than the single SNP in RRM1 during chronic exposure to chemotherapy in patients, and second, with two SNPs, a difference in the three-dimensional structure might be induced in patients without any change at the transcription and translation level of RR. One retrospective study indicated that RRM1 levels might influence both the response and survival of non-small cell lung cancer patients to gemcitabinecisplatin combination therapy [21]. RRM1 is suggested to act as a "molecular sink" for gemcitabine, whereby the drug binds irreversibly to subunit RRM1 and inactivates it. Therefore, our hypothesis is that the altered sequence of RRM1 might induce a structural change in RRM1 that could easily bind to gemcitabine and thus induce drug resistance. Under this hypothesis, we chose cSNP in a nonsynonymous form located within the functional and conserved region of the gene. For the confirmation of this hypothesis, an RRM1 simulation study with a three-dimensional structure and biochemical binding assay to gemcitabine is required in the future. Also, further molecular study is needed for understanding the mechanism of gemcitabine resistance with double SNPs of RRM1. Although we cannot definitely predict drug toxicity or efficacy with the cSNPs of RRM1, the haplotype with double SNPs (2455 A>G and 2464 G>A) showed a high association with gemcitabine susceptibility, suggesting this haplotype as a potential association marker for gemcitabine compliance. A prospective comparison study using RRM1 SNP as a biomarker for gemcitabine toxicity, using it as a randomization factor, is warranted in the future. With this prospective confirmation, RRM1 SNP can be used as a biomarker for the prediction of toxicity or prognosis.
The authors indicate no potential conflicts of interest.
This work was supported by the Korea Science and Engineering Foundation (KOSEF) grant funded by the Korea government (MOST) (R11-2000-082-03002-0, R11-2000-082-03006-0, R11-2000-082-02008-0).
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